Packing nanomechanics of viral genomes

Packing nanomechanics of viral genomes.

We investigate the osmotic equilibrium between a bulk polyethylene glycol (PEG) solution and DNA tightly packed in a spherical capsid. We base our analysis on the equations of thermodynamic equilibrium in terms of osmotic pressure. The equality between external osmotic pressure of PEG and osmotic pressure of tightly packed DNA gives us the DNA encapsidation curves. In this way we directly conne...

Icosahedral packing of RNA viral genomes.

Many spherelike RNA viruses package a portion of their genome in a manner that mirrors the icosahedral symmetry of the protein container, or capsid. Graph-theoretical constraints forbid exact realization of icosahedral symmetry. This paper explores the consequences of graph-theoretical constraints on quasi-icosahedral genome structures. A key result is the prediction that the genome organizatio...

Nanostructure and nanomechanics of cement: polydisperse colloidal packing.

Cement setting and cohesion are governed by the precipitation and growth of calcium-silicate-hydrate, through a complex evolution of microstructure. A colloidal model to describe nucleation, packing, and rigidity of calcium-silicate-hydrate aggregates is proposed. Polydispersity and particle size dependent cohesion strength combine to produce a spectrum of packing fractions and of corresponding...

Viral Genomes

Induction of Nucleic Acid Damage in Viral Genomes Using Riboflavin in Combination with UV Light

Background and Aims: Despite the screening of blood donors, blood transfusion represents an ideal port of entry for blood-borne infection. Blood-borne pathogen transmission has been a concern since the earliest days of transfusion. The blood product of platelet (PLT) concentrates is still faced with the risk of bacterial and viral contaminations. Pathogen inactivation technologies offer a proac...